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brunello lentiviral library  (Addgene inc)


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    Addgene inc brunello lentiviral library
    Brunello Lentiviral Library, supplied by Addgene inc, used in various techniques. Bioz Stars score: 96/100, based on 277 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/brunello+crispr+knockout+pooled+library/Human+CRISPR+Knockout+Pooled+Library+(Brunello)+(Pooled+Library+%2373179%2C+%2373179-LV%2C+%2373178%2C+%2373178-LV)/pm41875887-862-16-19
    Average 96 stars, based on 277 article reviews
    brunello lentiviral library - by Bioz Stars, 2026-09
    96/100 stars

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    Related Articles

    CRISPR:

    Article Title: Targeting the HTLV-I-Regulated BATF3/IRF4 Transcriptional Network in Adult T Cell Leukemia/Lymphoma
    Article Snippet: ATLL cell lines (ST1, KK1, Su9T01) and mantle cell lymphoma (MCL) lines were transduced in duplicate with the Brunello CRISPR knockout pooled library (gift of David Root and John Doench; Addgene #73178). .. ATLL cell lines (ST1, KK1, Su9T01) and mantle cell lymphoma (MCL) lines were transduced in duplicate with the Brunello CRISPR knockout pooled library (gift of David Root and John Doench; Addgene #73178). ..

    Article Title: Targeting the HTLV-I-Regulated BATF3/IRF4 Transcriptional Network in Adult T Cell Leukemia/Lymphoma
    Article Snippet: .. CRISPR-Cas9 Screen Analysis ATLL cell lines (ST1, KK1, Su9T01) and mantle cell lymphoma (MCL) lines were transduced in duplicate with the Brunello CRISPR knockout pooled library (gift of David Root and John Doench; Addgene #73178). ..

    Article Title: TP53-dependent toxicity of CRISPR/Cas9 cuts is differential across genomic loci and can confound genetic screening
    Article Snippet: .. Moreover the genetic screening data on the A549 TP53wt and TP53 −/− cells (the pseudoreplicates with and without doxycycline) was as reported in Biayna et al. , from where we quote verbatim “For sgRNA screening of the A549 [...], A549 TP53 −/− [...], cells were infected with the Brunello CRISPR Knockout Pooled Library (73179-LV, Addgene, USA) . ..

    Article Title: Targeting the HTLV-I-Regulated BATF3/IRF4 Transcriptional Network in Adult T Cell Leukemia/Lymphoma
    Article Snippet: LentiCas9-Blast , A gift from Dr. Feng Zhang (Addgene plasmid) , # 52962. .. Brunello CRISPR knockout pooled library , A gift from Drs. David Root and John Doench (Addgene plasmid) , #73178. .. Retroviral shRNA library , Ceribelli et al., 2016 ; Yang et al., 2012 , N/A.

    Article Title: Genome-wide CRISPR screen identifies CDK6 as a therapeutic target in adult T-cell leukemia/lymphoma.
    Article Snippet: .. Cell lines and cell culture All lines were cultured with RPMI media containing 10% fetal calf serum, penicillin, and streptomycin and were maintained in a humidified, 5% CO2 incubator at 37 C. Whole-genome CRISPR-Cas9 screen analysis Single-guide RNA (sgRNA) library screening was performed as previously described.5 Cell lines were transduced in duplicate with the Brunello CRISPR knockout pooled library (gift of David Root and John Doench; Addgene 73178). .. Cells were cultured for 4 weeks, and starting/endpoint cell aliquots were harvested for genomic DNA extraction. sgRNA sequences were amplified and sequenced using NEXTSeq500 (Illumina).

    Article Title: Loss of the abasic site sensor HMCES is synthetic lethal with the activity of the APOBEC3A cytosine deaminase in cancer cells.
    Article Snippet: The cell lines were transduced and selected with puromycin for 72 h. As a control, we transduced LXF-289 (A3A) cells with the nonmammalian shRNA Control Plasmid DNA shC002 (MilliporeSigma). .. For sgRNA screening of the A549 ± A3A, A549TP53−/− ± A3A, LXF-289 ± A3A, cells were infected with the Brunello CRISPR Knockout Pooled Library (73179-LV, Addgene, USA). ..

    Article Title: Whole-genome CRISPR screening identifies molecular mechanisms of PD-L1 expression in adult T-cell leukemia/lymphoma
    Article Snippet: .. ATLL cell lines, ST1 and KK1, were transduced with Brunello CRISPR knockout pooled library containing 77,441 sgRNAs and an average of 4 sgRNAs per gene (gift of David Root and John Doench; Addgene #73178). ..

    Knock-Out:

    Article Title: Targeting the HTLV-I-Regulated BATF3/IRF4 Transcriptional Network in Adult T Cell Leukemia/Lymphoma
    Article Snippet: ATLL cell lines (ST1, KK1, Su9T01) and mantle cell lymphoma (MCL) lines were transduced in duplicate with the Brunello CRISPR knockout pooled library (gift of David Root and John Doench; Addgene #73178). .. ATLL cell lines (ST1, KK1, Su9T01) and mantle cell lymphoma (MCL) lines were transduced in duplicate with the Brunello CRISPR knockout pooled library (gift of David Root and John Doench; Addgene #73178). ..

    Article Title: Targeting the HTLV-I-Regulated BATF3/IRF4 Transcriptional Network in Adult T Cell Leukemia/Lymphoma
    Article Snippet: .. CRISPR-Cas9 Screen Analysis ATLL cell lines (ST1, KK1, Su9T01) and mantle cell lymphoma (MCL) lines were transduced in duplicate with the Brunello CRISPR knockout pooled library (gift of David Root and John Doench; Addgene #73178). ..

    Article Title: TP53-dependent toxicity of CRISPR/Cas9 cuts is differential across genomic loci and can confound genetic screening
    Article Snippet: .. Moreover the genetic screening data on the A549 TP53wt and TP53 −/− cells (the pseudoreplicates with and without doxycycline) was as reported in Biayna et al. , from where we quote verbatim “For sgRNA screening of the A549 [...], A549 TP53 −/− [...], cells were infected with the Brunello CRISPR Knockout Pooled Library (73179-LV, Addgene, USA) . ..

    Article Title: Targeting the HTLV-I-Regulated BATF3/IRF4 Transcriptional Network in Adult T Cell Leukemia/Lymphoma
    Article Snippet: LentiCas9-Blast , A gift from Dr. Feng Zhang (Addgene plasmid) , # 52962. .. Brunello CRISPR knockout pooled library , A gift from Drs. David Root and John Doench (Addgene plasmid) , #73178. .. Retroviral shRNA library , Ceribelli et al., 2016 ; Yang et al., 2012 , N/A.

    Article Title: Genome-wide CRISPR screen identifies CDK6 as a therapeutic target in adult T-cell leukemia/lymphoma.
    Article Snippet: .. Cell lines and cell culture All lines were cultured with RPMI media containing 10% fetal calf serum, penicillin, and streptomycin and were maintained in a humidified, 5% CO2 incubator at 37 C. Whole-genome CRISPR-Cas9 screen analysis Single-guide RNA (sgRNA) library screening was performed as previously described.5 Cell lines were transduced in duplicate with the Brunello CRISPR knockout pooled library (gift of David Root and John Doench; Addgene 73178). .. Cells were cultured for 4 weeks, and starting/endpoint cell aliquots were harvested for genomic DNA extraction. sgRNA sequences were amplified and sequenced using NEXTSeq500 (Illumina).

    Article Title: Loss of the abasic site sensor HMCES is synthetic lethal with the activity of the APOBEC3A cytosine deaminase in cancer cells.
    Article Snippet: The cell lines were transduced and selected with puromycin for 72 h. As a control, we transduced LXF-289 (A3A) cells with the nonmammalian shRNA Control Plasmid DNA shC002 (MilliporeSigma). .. For sgRNA screening of the A549 ± A3A, A549TP53−/− ± A3A, LXF-289 ± A3A, cells were infected with the Brunello CRISPR Knockout Pooled Library (73179-LV, Addgene, USA). ..

    Article Title: Whole-genome CRISPR screening identifies molecular mechanisms of PD-L1 expression in adult T-cell leukemia/lymphoma
    Article Snippet: .. ATLL cell lines, ST1 and KK1, were transduced with Brunello CRISPR knockout pooled library containing 77,441 sgRNAs and an average of 4 sgRNAs per gene (gift of David Root and John Doench; Addgene #73178). ..

    Infection:

    Article Title: TP53-dependent toxicity of CRISPR/Cas9 cuts is differential across genomic loci and can confound genetic screening
    Article Snippet: .. Moreover the genetic screening data on the A549 TP53wt and TP53 −/− cells (the pseudoreplicates with and without doxycycline) was as reported in Biayna et al. , from where we quote verbatim “For sgRNA screening of the A549 [...], A549 TP53 −/− [...], cells were infected with the Brunello CRISPR Knockout Pooled Library (73179-LV, Addgene, USA) . ..

    Article Title: Loss of the abasic site sensor HMCES is synthetic lethal with the activity of the APOBEC3A cytosine deaminase in cancer cells.
    Article Snippet: The cell lines were transduced and selected with puromycin for 72 h. As a control, we transduced LXF-289 (A3A) cells with the nonmammalian shRNA Control Plasmid DNA shC002 (MilliporeSigma). .. For sgRNA screening of the A549 ± A3A, A549TP53−/− ± A3A, LXF-289 ± A3A, cells were infected with the Brunello CRISPR Knockout Pooled Library (73179-LV, Addgene, USA). ..

    Plasmid Preparation:

    Article Title: Targeting the HTLV-I-Regulated BATF3/IRF4 Transcriptional Network in Adult T Cell Leukemia/Lymphoma
    Article Snippet: LentiCas9-Blast , A gift from Dr. Feng Zhang (Addgene plasmid) , # 52962. .. Brunello CRISPR knockout pooled library , A gift from Drs. David Root and John Doench (Addgene plasmid) , #73178. .. Retroviral shRNA library , Ceribelli et al., 2016 ; Yang et al., 2012 , N/A.

    Cell Culture:

    Article Title: Genome-wide CRISPR screen identifies CDK6 as a therapeutic target in adult T-cell leukemia/lymphoma.
    Article Snippet: .. Cell lines and cell culture All lines were cultured with RPMI media containing 10% fetal calf serum, penicillin, and streptomycin and were maintained in a humidified, 5% CO2 incubator at 37 C. Whole-genome CRISPR-Cas9 screen analysis Single-guide RNA (sgRNA) library screening was performed as previously described.5 Cell lines were transduced in duplicate with the Brunello CRISPR knockout pooled library (gift of David Root and John Doench; Addgene 73178). .. Cells were cultured for 4 weeks, and starting/endpoint cell aliquots were harvested for genomic DNA extraction. sgRNA sequences were amplified and sequenced using NEXTSeq500 (Illumina).

    Library Screening:

    Article Title: Genome-wide CRISPR screen identifies CDK6 as a therapeutic target in adult T-cell leukemia/lymphoma.
    Article Snippet: .. Cell lines and cell culture All lines were cultured with RPMI media containing 10% fetal calf serum, penicillin, and streptomycin and were maintained in a humidified, 5% CO2 incubator at 37 C. Whole-genome CRISPR-Cas9 screen analysis Single-guide RNA (sgRNA) library screening was performed as previously described.5 Cell lines were transduced in duplicate with the Brunello CRISPR knockout pooled library (gift of David Root and John Doench; Addgene 73178). .. Cells were cultured for 4 weeks, and starting/endpoint cell aliquots were harvested for genomic DNA extraction. sgRNA sequences were amplified and sequenced using NEXTSeq500 (Illumina).

    Transduction:

    Article Title: Whole-genome CRISPR screening identifies molecular mechanisms of PD-L1 expression in adult T-cell leukemia/lymphoma
    Article Snippet: .. ATLL cell lines, ST1 and KK1, were transduced with Brunello CRISPR knockout pooled library containing 77,441 sgRNAs and an average of 4 sgRNAs per gene (gift of David Root and John Doench; Addgene #73178). ..



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    Image Search Results


    Genome-wide CRISPR knockout screens for proliferation and cisplatin sensitization of HeLa WT and EXO1-knockout cells. ( A ) Overview of the CRISPR knockout screens to identify genes that are required for proliferation and cisplatin sensitivity of WT and EXO1-knockout HeLa cells. Created in BioRender. Moldovan, G. (2026); https://BioRender.com/c77sziu . ( B ) The cellular survival of WT and EXO1-knockout HeLa cells at each splitting time. Survival was calculated by dividing the number of live cells in the cisplatin-treatment population to the control (no treatment) population.

    Journal: Nucleic Acids Research

    Article Title: Genome-wide CRISPR screens identify the EXO1-CAF-1 pathway suppressing R-loop-associated DNA damage

    doi: 10.1093/nar/gkag226

    Figure Lengend Snippet: Genome-wide CRISPR knockout screens for proliferation and cisplatin sensitization of HeLa WT and EXO1-knockout cells. ( A ) Overview of the CRISPR knockout screens to identify genes that are required for proliferation and cisplatin sensitivity of WT and EXO1-knockout HeLa cells. Created in BioRender. Moldovan, G. (2026); https://BioRender.com/c77sziu . ( B ) The cellular survival of WT and EXO1-knockout HeLa cells at each splitting time. Survival was calculated by dividing the number of live cells in the cisplatin-treatment population to the control (no treatment) population.

    Article Snippet: For CRISPR knockout screens, the Brunello Human CRISPR knockout pooled lentiviral library (Addgene 73179) was used [ ].

    Techniques: Genome Wide, CRISPR, Knock-Out, Control

    Analyses of the cisplatin sensitivity CRISPR screens in WT and EXO1-knockout cells. ( A ) Functional annotation clustering of the top hits with MAGeCK score lower than 0.005 which cause cisplatin sensitivity in WT HeLa cells, using Gene Ontology and Uniprot terms. ( B ) Table showing the biological processes and corresponding genes from the Gene Ontology pathway analysis of the top hits with MAGeCK score lower than 0.005 which cause cisplatin sensitivity in WT HeLa cells. GO_BP terms with negative logP >1 are presented. ( C, D ) Functional annotation clustering of the top hits with MAGeCK score lower than 0.005 which cause cisplatin sensitivity in HeLa-EXO1 KO#1 ( C ) and HeLa-EXO1 KO#3 ( D ) cells using Gene Ontology and Uniprot terms. ( E ) Diagram showing the overlap of identical genes within the top cisplatin sensitivity hits in the two EXO1-knockout cell lines. The number of genes with MAGeCK score lower than 0.005 (left) and 0.015 (right) are shown. ( F ) The number of common genes within the top cisplatin sensitivity hits in the two EXO1-knockout cell lines compared to the random probability of identical hits. The top hits with MAGeCK score lower than 0.005 (left) and 0.015 (right) were included in the analysis. ( G ) Diagram showing the overlap of identical genes within the top cisplatin sensitivity hits in WT and EXO1 KO#1 cells. The number of genes with MAGeCK score lower than 0.005 (left) and 0.015 (right) are shown. ( H ) The number of common genes within the top cisplatin sensitivity hits in WT and EXO1 KO#1 cells compared to the random probability of identical hits. The top hits with MAGeCK score lower than 0.005 (left) and 0.015 (right) were included in the analysis. ( I ) Diagram showing the overlap of identical genes within the top cisplatin sensitivity hits in WT and EXO1 KO#3 cells. The number of genes with MAGeCK score lower than 0.005 (left) and 0.015 (right) are shown. ( J ) The number of common genes within the top cisplatin sensitivity hits in WT and EXO1 KO#3 cells compared to the random probability of identical hits. The top hits with MAGeCK score lower than 0.005 (left) and 0.015 (right) were included in the analysis.

    Journal: Nucleic Acids Research

    Article Title: Genome-wide CRISPR screens identify the EXO1-CAF-1 pathway suppressing R-loop-associated DNA damage

    doi: 10.1093/nar/gkag226

    Figure Lengend Snippet: Analyses of the cisplatin sensitivity CRISPR screens in WT and EXO1-knockout cells. ( A ) Functional annotation clustering of the top hits with MAGeCK score lower than 0.005 which cause cisplatin sensitivity in WT HeLa cells, using Gene Ontology and Uniprot terms. ( B ) Table showing the biological processes and corresponding genes from the Gene Ontology pathway analysis of the top hits with MAGeCK score lower than 0.005 which cause cisplatin sensitivity in WT HeLa cells. GO_BP terms with negative logP >1 are presented. ( C, D ) Functional annotation clustering of the top hits with MAGeCK score lower than 0.005 which cause cisplatin sensitivity in HeLa-EXO1 KO#1 ( C ) and HeLa-EXO1 KO#3 ( D ) cells using Gene Ontology and Uniprot terms. ( E ) Diagram showing the overlap of identical genes within the top cisplatin sensitivity hits in the two EXO1-knockout cell lines. The number of genes with MAGeCK score lower than 0.005 (left) and 0.015 (right) are shown. ( F ) The number of common genes within the top cisplatin sensitivity hits in the two EXO1-knockout cell lines compared to the random probability of identical hits. The top hits with MAGeCK score lower than 0.005 (left) and 0.015 (right) were included in the analysis. ( G ) Diagram showing the overlap of identical genes within the top cisplatin sensitivity hits in WT and EXO1 KO#1 cells. The number of genes with MAGeCK score lower than 0.005 (left) and 0.015 (right) are shown. ( H ) The number of common genes within the top cisplatin sensitivity hits in WT and EXO1 KO#1 cells compared to the random probability of identical hits. The top hits with MAGeCK score lower than 0.005 (left) and 0.015 (right) were included in the analysis. ( I ) Diagram showing the overlap of identical genes within the top cisplatin sensitivity hits in WT and EXO1 KO#3 cells. The number of genes with MAGeCK score lower than 0.005 (left) and 0.015 (right) are shown. ( J ) The number of common genes within the top cisplatin sensitivity hits in WT and EXO1 KO#3 cells compared to the random probability of identical hits. The top hits with MAGeCK score lower than 0.005 (left) and 0.015 (right) were included in the analysis.

    Article Snippet: For CRISPR knockout screens, the Brunello Human CRISPR knockout pooled lentiviral library (Addgene 73179) was used [ ].

    Techniques: CRISPR, Knock-Out, Functional Assay

    Analyses of the EXO1 synthetic lethality CRISPR screens. ( A ) Diagram showing the overlap of identical genes within the top synthetic lethality hits in the two EXO1-knockout cell lines. The number of genes with MAGeCK score lower than 0.005 (left) and 0.015 (right) are shown. ( B ) The number of common genes within the top synthetic lethality hits in the two EXO1-knockout cell lines compared to the random probability of identical hits. The top hits with MAGeCK score lower than 0.005 (left) and 0.015 (right) were included in the analysis. ( C ) Functional annotation clustering of the common genes within the top synthetic lethality hits with MAGeCK score lower than 0.015 in the two EXO1-knockout cell lines, using Gene Ontology and Uniprot terms. ( D ) Diagram showing the overlap of identical genes within the top synthetic lethality hits in EXO1 KO#1 cells (compared to WT) and the control comparison to EXO1 KO#3 . The number of genes with MAGeCK score lower than 0.005 (left) and 0.015 (right) are shown. ( E ) The number of common genes within the top synthetic lethality hits in EXO1 KO#1 cells (compared to WT) and the control comparison to EXO1 KO#3 . The top hits with MAGeCK score lower than 0.005 (left) and 0.015 (right) were included in the analysis.

    Journal: Nucleic Acids Research

    Article Title: Genome-wide CRISPR screens identify the EXO1-CAF-1 pathway suppressing R-loop-associated DNA damage

    doi: 10.1093/nar/gkag226

    Figure Lengend Snippet: Analyses of the EXO1 synthetic lethality CRISPR screens. ( A ) Diagram showing the overlap of identical genes within the top synthetic lethality hits in the two EXO1-knockout cell lines. The number of genes with MAGeCK score lower than 0.005 (left) and 0.015 (right) are shown. ( B ) The number of common genes within the top synthetic lethality hits in the two EXO1-knockout cell lines compared to the random probability of identical hits. The top hits with MAGeCK score lower than 0.005 (left) and 0.015 (right) were included in the analysis. ( C ) Functional annotation clustering of the common genes within the top synthetic lethality hits with MAGeCK score lower than 0.015 in the two EXO1-knockout cell lines, using Gene Ontology and Uniprot terms. ( D ) Diagram showing the overlap of identical genes within the top synthetic lethality hits in EXO1 KO#1 cells (compared to WT) and the control comparison to EXO1 KO#3 . The number of genes with MAGeCK score lower than 0.005 (left) and 0.015 (right) are shown. ( E ) The number of common genes within the top synthetic lethality hits in EXO1 KO#1 cells (compared to WT) and the control comparison to EXO1 KO#3 . The top hits with MAGeCK score lower than 0.005 (left) and 0.015 (right) were included in the analysis.

    Article Snippet: For CRISPR knockout screens, the Brunello Human CRISPR knockout pooled lentiviral library (Addgene 73179) was used [ ].

    Techniques: CRISPR, Knock-Out, Functional Assay, Control, Comparison

    Co-depletion of EXO1 and CHAF1A reduces cellular viability. ( A, C, E ). Volcano plots showing the results of genome-wide CRISPR knockout screens to identify EXO1 synthetic lethality interactions. Genes targeted by the library are presented based on their impact on the viability of EXO1 KO#1 compared to WT cells ( A ), EXO1 KO#3 compared to WT cells ( C ), and as control, EXO1 KO#1 compared to EXO1 KO#3 cells ( E ). Genes are plotted by the −log 10 of their respective negative and positive P -values and associated log 2 Fold Change values. The hit chosen for validation, namely CHAF1A, is indicated. ( B, D, F ) Scatterplots showing the results of genome-wide CRISPR knockout screens to identify EXO1 synthetic lethality interactions. Genes targeted by the library are plotted based on their impact on the viability of EXO1 KO#1 compared to WT cells ( B ), EXO1 KO#3 compared to WT cells ( D ), and as control, EXO1 KO#1 compared to EXO1 KO#3 cells ( F ). The hit chosen for validation, namely CHAF1A, is indicated. ( G ) Table showing the ranks in the synthetic lethality screens, and the biological roles of CHAF1A. ( H, I ) Clonogenic survival assays showing that siRNA ( H ) and sgRNA ( I ) depletion of CHAF1A reduces the viability of EXO1-knockout cells compared to WT HeLa cells. Clonogenic survival is presented normalized to WT control cells. The average of three independent experiments, with standard deviations indicated as error bars, is shown. Asterisks indicate statistical significance ( t -test unpaired).

    Journal: Nucleic Acids Research

    Article Title: Genome-wide CRISPR screens identify the EXO1-CAF-1 pathway suppressing R-loop-associated DNA damage

    doi: 10.1093/nar/gkag226

    Figure Lengend Snippet: Co-depletion of EXO1 and CHAF1A reduces cellular viability. ( A, C, E ). Volcano plots showing the results of genome-wide CRISPR knockout screens to identify EXO1 synthetic lethality interactions. Genes targeted by the library are presented based on their impact on the viability of EXO1 KO#1 compared to WT cells ( A ), EXO1 KO#3 compared to WT cells ( C ), and as control, EXO1 KO#1 compared to EXO1 KO#3 cells ( E ). Genes are plotted by the −log 10 of their respective negative and positive P -values and associated log 2 Fold Change values. The hit chosen for validation, namely CHAF1A, is indicated. ( B, D, F ) Scatterplots showing the results of genome-wide CRISPR knockout screens to identify EXO1 synthetic lethality interactions. Genes targeted by the library are plotted based on their impact on the viability of EXO1 KO#1 compared to WT cells ( B ), EXO1 KO#3 compared to WT cells ( D ), and as control, EXO1 KO#1 compared to EXO1 KO#3 cells ( F ). The hit chosen for validation, namely CHAF1A, is indicated. ( G ) Table showing the ranks in the synthetic lethality screens, and the biological roles of CHAF1A. ( H, I ) Clonogenic survival assays showing that siRNA ( H ) and sgRNA ( I ) depletion of CHAF1A reduces the viability of EXO1-knockout cells compared to WT HeLa cells. Clonogenic survival is presented normalized to WT control cells. The average of three independent experiments, with standard deviations indicated as error bars, is shown. Asterisks indicate statistical significance ( t -test unpaired).

    Article Snippet: For CRISPR knockout screens, the Brunello Human CRISPR knockout pooled lentiviral library (Addgene 73179) was used [ ].

    Techniques: Genome Wide, CRISPR, Knock-Out, Control, Biomarker Discovery